A compilation of ENCODE metadata


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Documentation for package ‘ENCODExplorerData’ version 0.99.5

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clean_table Clean a data.frame that was produced by fetch_table_from_ENCODE_REST
ENCODExplorerData ENCODExplorerData
encode_df_full ENCODE file metadata, Full version
encode_df_lite ENCODE file metadata, Light version
fetch_and_clean_raw_ENCODE_tables Fetches and preprocess the raw metadata tables from ENCODE.
generate_encode_df_full Given the raw ENCODE tables, this generate a data.table with the full set of file metadata columns.
generate_encode_df_lite Extract file metadata from the full set of ENCODE metadata tables.
get_encode_types A list of known tables from ENCODE database.
get_schemas Extract the schemas from ENCODE's github
get_schema_urls Returns the URLs for downloading the XML schemas from ENCODE's github.