Differential gene usage in immune repertoires


[Up] [Top]

Documentation for package ‘IgGeneUsage’ version 1.18.0

Help Pages

IgGeneUsage-package The R package IgGeneUsage
CDR3_Epitopes Net charge usage in CDR3 sequences of T-cell receptor repertoires disturbed by Influenza-A and CMV
DGU Differential immunoglobulin (Ig) gene usage in immune repertoires
d_zibb_1 Simulated Ig gene usage data
d_zibb_2 Simulated Ig gene usage data
d_zibb_3 Simulated Ig gene usage data
d_zibb_4 Simulated Ig gene usage data
d_zibb_5 Simulated Ig gene usage data
d_zibb_6 Simulated Ig gene usage data
Ig IGHV gene family usage in vaccine-challenged B-cell repertoires
IgGeneUsage The R package IgGeneUsage
IGHV_HCV IGHV gene usage in HCV+ and healthy individuals
Ig_SE IGHV gene family usage in vaccine-challenged B-cell repertoires (SummarizedExperiment object)
LOO Leave-one-out analysis for quantitative evaluation of the probability of DGU