Supporting Data for SeSAMe Package


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Documentation for package ‘sesameData’ version 1.22.0

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build_GENCODE_gtf build GENCODE gtf
df_master Master data frame for all object to cache
extend Extend a GRanges
inferPlatformFromProbeIDs infer platform from Probe_IDs
sesameDataCache Cache SeSAMe data
sesameDataCacheAll Cache all SeSAMe data
sesameDataGet Get SeSAMe data
sesameDataGet_checkEnv Check whether the title exists in cacheEnv
sesameDataGet_resetEnv Empty cache environment to free memory
sesameDataHas Whether sesameData has
sesameDataList List all SeSAMe data
sesameData_annoProbes Annotate Probes by Probe ID
sesameData_check_genome Find genome assembly version(s) supported for a platform
sesameData_check_platform Check platform code
sesameData_getGenomeInfo Get genome info files
sesameData_getManifestGRanges get Infinium manifest GRanges
sesameData_getProbesByGene Get Probes by Genes or Gene Promoters
sesameData_getProbesByRegion Get probes by genomic region
sesameData_getTxnGRanges convert GRangesList to transcript GRanges
sesameData_txnToGeneGRanges convert transcript GRanges to gene GRanges