appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV


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Documentation for package ‘appreci8R’ version 1.20.2

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appreci8R-package appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
annotate Annotate and filter calls
appreci8 appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
appreci8R appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
appreci8Rshiny A user interface to perform the whole appreci8-analysis
combineOutput Combine output of different variant calling tools
determineCharacteristics Determine characteristics of the calls
evaluateCovAndBQ Evaluate coverage and base quality
filterTarget Excludes all off-target calls from further analysis.
finalFiltration Perform final filtration according to the appreci8-algorithm
normalize Normalize calls
Variant Filtration appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV