Import methods for 10X Genomics files


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Documentation for package ‘TENxIO’ version 1.4.0

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TENxIO-package TENxIO: A Bioconductor package for importing 10X Genomics files
.TENxFile TENxFile: General purpose class for 10X files
.TENxFileList TENxFileList: A list-like representation for TENxFiles
.TENxFragments TENxFragments: A class to represent fragments data as 'GRanges'
.TENxH5 TENxH5: The HDF5 file representation class for 10X Data
.TENxMTX TENxMTX: The Matrix Market representation class for 10X Data
.TENxPeaks TENxPeaks: The class to represent 10x Peaks files
.TENxTSV TENxTSV: A class to represent 10x tab separated values files
annotation-method TENxPeaks: The class to represent 10x Peaks files
annotation<--method TENxPeaks: The class to represent 10x Peaks files
decompress-method TENxFileList: A list-like representation for TENxFiles
dim-method TENxH5: The HDF5 file representation class for 10X Data
dimnames-method TENxH5: The HDF5 file representation class for 10X Data
genome-method TENxH5: The HDF5 file representation class for 10X Data
import-method TENxFileList: A list-like representation for TENxFiles
import-method TENxFragments: A class to represent fragments data as 'GRanges'
import-method TENxH5: The HDF5 file representation class for 10X Data
import-method TENxMTX: The Matrix Market representation class for 10X Data
import-method TENxPeaks: The class to represent 10x Peaks files
import-method TENxTSV: A class to represent 10x tab separated values files
path-method TENxFileList: A list-like representation for TENxFiles
rowData-method TENxH5: The HDF5 file representation class for 10X Data
rowRanges-method TENxH5: The HDF5 file representation class for 10X Data
show-method TENxH5: The HDF5 file representation class for 10X Data
TENxFile TENxFile constructor function
TENxFile-class TENxFile: General purpose class for 10X files
TENxFileList TENxFileList: Represent groups of files from 10X Genomic
TENxFileList-class TENxFileList: A list-like representation for TENxFiles
TENxFragments TENxFragments: Import fragments files from 10X
TENxFragments-class TENxFragments: A class to represent fragments data as 'GRanges'
TENxH5 TENxH5: Represent H5 files from 10X
TENxH5-class TENxH5: The HDF5 file representation class for 10X Data
TENxIO TENxIO: A Bioconductor package for importing 10X Genomics files
TENxMTX TENxMTX: Represent Matrix Market Format Files from 10X
TENxMTX-class TENxMTX: The Matrix Market representation class for 10X Data
TENxPeaks Import 10x peak annotation files from 10x
TENxPeaks-class TENxPeaks: The class to represent 10x Peaks files
TENxTSV TENxTSV: A class to represent 10x tab separated values files
TENxTSV-class TENxTSV: A class to represent 10x tab separated values files
_PACKAGE TENxIO: A Bioconductor package for importing 10X Genomics files