Interface PileupEventIterator
- All Superinterfaces:
PileupEvent
- All Known Subinterfaces:
Pileup
,PileupIterator
Iterates across a list of PileupEvents
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Field Summary
Fields inherited from interface ngs.PileupEvent
alignment_minus_strand, alignment_start, alignment_stop, deletion, insertion, insertion_before_deletion, insertion_before_match, insertion_before_mismatch, intron_minus, intron_plus, intron_unknown, match, mismatch, normal_indel, read_gap, read_overlap, replacement
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Method Summary
Modifier and TypeMethodDescriptionboolean
Advance to first PileupEvent on initial invocation advance to next PileupEvent subsequentlyvoid
resets to initial iterator state the next call to "nextPileupEvent" will advance to first eventMethods inherited from interface ngs.PileupEvent
getAlignmentBase, getAlignmentId, getAlignmentPosition, getAlignmentQuality, getEventIndelType, getEventRepeatCount, getEventType, getFirstAlignmentPosition, getInsertionBases, getInsertionQualities, getLastAlignmentPosition, getMappingQuality
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Method Details
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nextPileupEvent
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resetPileupEvent
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